Based on what? Why would Madara intentionally fire his TSB's out of his range to control them? That makes literally zero sense.
Also, we see prettly clearly that the TSB were disintegrating Minato's cloak when he teleported them, meaning their effect is still active when he teleports them.
That's not a higher layer though.
- Kaguya was immune to them, did Naruto not use them against her?
- Madara was immune to them, did Naruto not use them against him?
- Sasuke was immune to them, did Naruto not use them against him?
They're still very useful even against opponents that are immune to the generic effects, she has zero excuse.
We don't really know if she has regular TSB iirc, and even if she does, it certainly isn't in character for her to use them given that she never did so.