If Goku has a soul, Anos can naturally affect his concept, even if it is different in his verse. (Why are you even bringing this up when it's a no-brainer?) Also, you never explained how roots are different from souls properly, while someone else who also understands this verse said that origin (aka root) exists within the soul (which means, although destroying the soul might not automatically destroy the origin as well (as it is a separate thing), the origin exists within the soul of a person/existence to begin with). Also, your Jojo analogy was incorrect, just like your Goku one. If a character can deal with souls (which Anos is capable of), they can naturally deal with stands without having them in their own verse. Why are you mentioning such obvious things?
At least come up with a valid reason or example before asserting your point.