Non-Corporeal: Doesn't sound like an ability, just that Sayuri and some shinobi can invite already dead shinobi into the special world they were in. Ghost/Souls exist, so yeah they'd be Non-Corporeal, but it isn't some special ability. Just that they die and become ghost.
Extrasensory Perception: Excellent all around.
Shapeshifting and limited Power Mimicry: Should be exclusive to Kiriya, and whoever else is shown to do this.
Subjective Reality: Will need an in game scan for something like this, not just a wiki page.
Perception Manipulation: That isn't perception manipulation, that's just Stealth. It'd be perception manipulation if they could make others believe they're "invisible", despite not really being invisible. Something like the Stone Mask from Majora's Mask.
Space-Time Manipulation: I have no idea where those are from, assuming they're canon that'd be limited Spatial Manipulation. Though it's also possible this is just flowery language and isn't actually happening. If there are more scans of this, I'd love to see them. However there is no mention of time manipulation at all.
Supernatural Willpower: That all seems excellent.
Enhanced Senses: That seems fine to me as well
Pseudo-Flight: This is fine. Though it should be limited flight, as they seem to push off in the air and can do that continuously. But cannot fly freely like Superman.
Regeneration: That isn't regeneration. First off I highly doubt her skin actually became crunchy, sounds like she is imagining it. Also Mid-High would be regeneration from vapor or dust, burnt/crunchy skin wouldn't be Mid-High. Burnt skin would be Low-Mid or High-Low. Be regardless I have no recollection of Shinobi regenerating injures. You need to provide more scans for that to be accepted.
Soul Manipulation and Non-Physical Interaction: There is no Soul Manipulation here, just possible Non-Physical Interaction. However I do not believe this is the case, Yagyu's thing seems to be plain boasting. I need more context for this scene. And I believe them interacting with Ryoki is due to the special world they're in, not their own special power. Black Ice, I'm not certain on that.
Matter Manipulation/Transmutation: Neither, just seems like energy manipulation which made her weapons longer. Also I don't see whips, just that her weapons leave a green energy trail.
Resistances
Power Nullification: Need more context than this, since I have no idea what this is talking about. Nothing about Homura nullifying power
Poison Manipulation: I don't see anything that mentions poison. If you can bring a scan/moment of the poison they took then this would be alright. I believe you, since it seems like Yomi believed she'll die despite not having fatal injures. But I do need to see them at least mention the poison.
Mind Manipulation: This is fine. Clearly implies that normal hypnosis doesn't work on them.
Fire/Heat/Cold Resistance: This is fine. However there is no such thing as Hellfire Manipulation. Also the cold thing is fine, however them falling in snow while naked isn't the best reason. Since even normal humans can survive that for a period of time. But them breaking out of ice would also be cold resistance, so that'd be fine still.
Gravity Manipulation: That doesn't mention a black hole at all, just that Miyabi can manipulate gravity? Which I guess should be an ability she needs if that is canon stuff.
Deconstruction and Soul Manipulation: No to deconstruction since it doesn't mention that it deconstructs anything, just that it'll vaguely break the body. Breaking the soul seems vague as well, but it's also mentioned that a ordinary person would instantly die. So I guess soul resistance would be alright.
Death Manipulation: No, because the above mentions that it breaks the body and soul. Which is what I imagine causes them to die, not death manipulation.
Empathic Manipulation: That isn't resistance to Empathic Manipulation, she'd have to be attack by something that forces her emotions to change and not be effect or have less of an effect on her than normal people. If such a thing exist, it'd be great to see it. But forcibly changing your mood doesn't fit the bill.
Curse Manipulation: This resistance is fine for Miyabi, but I need a scan that shows Asuka's will is superior to Miyabi's.
Madness Manipulation and Corruption: This seems alright to me, pretty standard actually.
