Homura is only 2-A, not High 2-A
I agree that Homura still loses though, but it's much closer than I originally believed.
In this battle, rather than saying "homura will let madoka kill her", which kinda goes against the point of the vsbattle, it is more likely that Homura will try to do a Rebellion on Madoka and imprison the sentient human bit (would count as incap). The thing is, in Rebellion Madoka was in no way expecting this and so was caught completely off guard. It's questionable if Homura could pull it off in a face to face batte.
Both have acausality, so time and causality manipulation are noped
Homura is soulless so Madoka's soul manip is noped.
Madoka isn't a physical being, and again is acausal, so Homura's spatial manip won't work
Both have concept manip, so both are capable of taking down the other
Madoka's power granting could possibly be used to gain herself some allies from the new yorkers, but I don't see it being helpful overall.
In a face to face battle, the two almost perfectly counter each other in terms of their power sets, which is why it comes down to personality, and in this fight Homura's personality gets her killed.
If they were both bloodlusted, I'd say inconclusive, as again their power sets perfectly counter each other, and are pretty much equal in power.