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We currently accept Boruto anime to be canon to the manga, with the anime filling in the gaps that manga leaves open. Issue is that a of anime events aren't mentioned in the manga, and there are a lot of differences in similar events.
The differences are:
Boruto Jougan and Byakugan. The Jougan appears in the first episode as an idea from Kishimoto himself, but in the manga, it's a Byakugan. You can tell the difference by the color, since the Jougan is black and blue, and Byakugan is full white. An eye that important, that'd determine his fate and "take everything from him". Jougan never appeared in the manga and I think it never will. Another issue is scenes that happened both in anime and manga, Jougan appears in the anime only. This makes completely sense, since while in "Borushiki" form, Boruto has a Byakugan in his right eye.
The Time Travel Arc. This Arc happens because of Urashiki, Otsutsuki that was never mentioned in the manga. Then Sasuke and Boruto go back in time to where Part 1 Naruto took place. To keep the consistency, Sasuke used a genjutsu to erase Naruto's memories. Issue is that this is never mentioned in the manga and anywhere in the anime again when it's adapting manga chapters. Urashiki's existence was never mentioned and he is a completely anime only character.
Sarada's 3 Tomoe in the manga Vs 2 (or 1, don't remember) Tomoe in the anime. When fighting Boro, Sarada uses the Chidori and we see the 3 Tomoe Sharingan. In the anime, she doesn't have a 3 Tomoe one. This event still need to happen in the anime.
Deepa was never mentioned in the manga, but he is a very important character in the anime.
Well, the anime just have a lot of arcs (it has more than 200 episodes, while the manga has ~60) and none of the anime-only arcs are mentioned in the manga. A lot of new characters and they are also not mentioned in the manga. However, this doesn't make the anime completely useless. It's just like in Dragon Ball Super case, where both anime and manga are canon but two different continuities. It'd be like, well, Boruto manga is canon to Naruto manga, Boruto anime is a different continuation. Boruto anime feats are exclusive to anime characters and vise versa. Profiles for anime characters should be created and we should remove the anime content of the anime from the current profile, including feats, abilities, images, scans etc etc.
The differences are:
Boruto Jougan and Byakugan. The Jougan appears in the first episode as an idea from Kishimoto himself, but in the manga, it's a Byakugan. You can tell the difference by the color, since the Jougan is black and blue, and Byakugan is full white. An eye that important, that'd determine his fate and "take everything from him". Jougan never appeared in the manga and I think it never will. Another issue is scenes that happened both in anime and manga, Jougan appears in the anime only. This makes completely sense, since while in "Borushiki" form, Boruto has a Byakugan in his right eye.
The Time Travel Arc. This Arc happens because of Urashiki, Otsutsuki that was never mentioned in the manga. Then Sasuke and Boruto go back in time to where Part 1 Naruto took place. To keep the consistency, Sasuke used a genjutsu to erase Naruto's memories. Issue is that this is never mentioned in the manga and anywhere in the anime again when it's adapting manga chapters. Urashiki's existence was never mentioned and he is a completely anime only character.
Sarada's 3 Tomoe in the manga Vs 2 (or 1, don't remember) Tomoe in the anime. When fighting Boro, Sarada uses the Chidori and we see the 3 Tomoe Sharingan. In the anime, she doesn't have a 3 Tomoe one. This event still need to happen in the anime.
Deepa was never mentioned in the manga, but he is a very important character in the anime.
Well, the anime just have a lot of arcs (it has more than 200 episodes, while the manga has ~60) and none of the anime-only arcs are mentioned in the manga. A lot of new characters and they are also not mentioned in the manga. However, this doesn't make the anime completely useless. It's just like in Dragon Ball Super case, where both anime and manga are canon but two different continuities. It'd be like, well, Boruto manga is canon to Naruto manga, Boruto anime is a different continuation. Boruto anime feats are exclusive to anime characters and vise versa. Profiles for anime characters should be created and we should remove the anime content of the anime from the current profile, including feats, abilities, images, scans etc etc.