Okay, lots of misconceptions being thrown around here about Samus' abilities.
Samus' Ice Beam does negate durability. All that revision said is that poking someone with an AZ stick is not AZ manipulation nor is getting poked by an AZ stick not AZ resistance. But Samus' ice beam consistently freezes enemies with
Planet level durability even in her
6-C key. So yes, I doubt Luffy will resist it.
Samus has all of her beam power ups stacked; so her ice beam and wave beam are stacked. It's even mentioned it on her profile that every 2D metroid game stacks her Power Arm power ups together. Wave Beam is
not electricity based; it's an intangible attack that phases through, walls, force-fields, and armor and attacks their weak spots. And the fact that it's stacked with Ice Beam also further enables freezing vitals to nigh-AZ. Also, she can spam it with unlimited ammo and she has rather wide AoE with it.
Also, her precognition is actually downplayed, because in depth Chozo lore which is going to be tackled later, has them with cosmic awareness. Mostly Tallon IV Chozo, but even regular Chozo actually still have quite good levels of precognition.
Samus also has rage power, which multiples her power and speed by 5; thus making it much stronger than Luffy.
Page 25. Also, Chozo DNA gives her amazing stamina and not a single shot depletes her energy one bit.