Okay, let me lay this out. Let's say you have a default god-figure, creator of everything, blah blah. This god-figure does not inherently get Conceptual Manipulation for the pure and simple reason that he made the cosmos. The main issue I have with Rukh is that none of your scans actually mention it doing what concepts do- that is to say, defining the "shape" of the thing. If I destroyed the rukh of, say, a rock- would rocks still look the same? All rocks? Each rock has their own rukh, though, right? So this clearly isn't a platonic concept- that's not how those work, to my understanding.
Also, I have reason to question the legitimacy of higher dimensions, too, but that's a can of worms I'd rather not deal with.