We can assume that Ki/Chakra is the same thing-- otherwise Goku won't be affected by Genjutsu because he doesn't have Chakra. Then, we compare the ability and versatility Goku displays manipulating the energy. Goku, like the Sage of Six paths, doesn't use hand seals to manipulate his energy. Can increase his power without letting it leak out of his body. Can both strengthen and weaken himself using his energy and show restraint that's so great that he can make himself able to be scratched by a bullet, or replicate the situation that Vegeta allowed Krillin to hurt him in. In addition to the fact that he can harness his abilities offensively without letting it leak out in excess once. And firing it out in concentrated forms with ease, whereas in the Naruto verse, doing that in limited forms is considered a high tier feat.
Goku's far faster than the Raikage using his augmentation-- meaning, scientifically speaking, his synapses should fire faster than the Raikage's, as that's why lightning Chakra increases his speed-- and that synapses firing" reason was why the Sharingan didn't work on them. Even if that's only through Chakra, Goku's augmentation using Ki to increase speed in a similar way, if not the exact same if you break down the science of it. But if these claims are hard sells to you because they make the Verse's mechanics one and the same with higher demonstrations in Naruto being synonymous with the basics of Dragon Ball (like Dragon Ball Characters not needing handseals), then fine. Though, I do think it's rather arbitrary to verse Equalize up and stop where Goku's skill with this similar power isn't as obvious as it would be.
Goku, from when he was little was demonstrating Spiritual Energy/Chi/Chakra control comparible to that of someone using Rasengan or Raikiri. Now Goku can spam energy blasts in multiple varieties, in different techniques, in different places, wheras the top tier Manipulators of the Naruto verse barely comes to his foot in doing what the basics of Manipulation in DBZ can do. Naruto and Sasuke's chakra cloak and Susanoo comes close-- being complex energy constructs and surpassing anything Canon Goku has done (unless he demonstrates the ability to create a Dragon Fist).
Even then, I still don't see them haxing Goku with Genjutsu, considering how they're not even able to hax the Juubi or Madara or Kaguya, all who have a massive amount of power according to the Sensory Ninja, measured in both size and quality iirc. Perhaps its just size. Either way... Not looking good.