Resistances he showed by himself/scale from being a god and thus should be kept: Poison Manipulation (Survived after drinking the Water of the Gods), High Pain Tolerance, Extreme Cold, Cosmic Radiations, Absorption, Sleep Manipulation, Heat Manipulation, Electricity Manipulation, Existence Erasure, Empathic Manipulation, Extrasensory Perception (Cannot be sensed by beings lesser than a God), Soul Manipulation (Survived attacks from Shroom that targeted his soul), Mind Manipulation (Demigra couldn't take over his mind and make him a Time Breaker), Magic, Law Manipulation, Physics Manipulation, Gravity Manipulation (Demigra questioned why his magic wouldn't work on him), Temporal BFR (Was unaffected by one of Demigra's attacks, which had sent Beat through time), Time Stop (Repeatedly resisted Hit's attempts to freeze him in time until Hit powered up further), Morality Manipulation, Possession, Madness Manipulation (Type 2), Corruption (Able to resist the effects of dark energy), Power Nullification (Beings with divinity cannot be affected by Android 21's waves, which can nullify powers), Memory Manipulation (Android 21's waves have also shown to be able to erase memories)
Others: Time Manipulation (Goku is far more powerful than lesser Demon Gods, who were unaffected by Chronoa's time-based abilities) and Transmutation (Goku is far more powerful than SSJ Vegito and Time Patroller Trunks, both of whom could fight after being turned into candy)
Tbf, Time Manipulation and Time Stop should be combined into one because Goku: Xeno has indeed shown resistance Multiversal Time Abilities (from Towa, not from Chronoa).
I agree with the removal of Transmutation tho, that has no reason to be there.